species:   Clros
pid:       PID1846
parent:    cro-mir-36
paralog:   
locus:     CADEHS020000106.2:298129-298217
matures:   ['UCAAACACAAUUAGCGGUC', 'CCGCUAAUUGUGUUUGAGA']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000106.2:298129-298217

452 out of bounds
764 alignments
234 proper strand
221 stranded perfect matches

*******************                                                ********************* 
UCAAACACAAUUAGCGGUCUAUACCCAAACCUUCCACUCUGGAAAAUUUUUGGAAAAGUUGGGUAUAGACCGCUAAUUGUGUUUGAGAU
((((((((((((((((((((((((((((...(((((..............)))))...))))))))))))))))))))))))))))...
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=106 c
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 c*
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=106 ma
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 ma*

UCAAACACAAUUAGCGGU----------------------------------------------------------------------- l=18 a=2 
UCAAACACAAUUAGCGGa----------------------------------------------------------------------- l=18 a=1 
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=106 (c,ma)
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=100 
UCAAACACAAUUAGCGGUCa--------------------------------------------------------------------- l=20 a=3 
UCAAACACAAUUAGCGGUCc--------------------------------------------------------------------- l=20 a=1 
UCAAACACAAUUAGCGGUCUA-------------------------------------------------------------------- l=21 a=8 
UCAAACACAAUUAGCGGUCaA-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCUAU------------------------------------------------------------------- l=22 a=2 
UCAAACACAAUUAGCGGUCUAUA------------------------------------------------------------------ l=23 a=1 
-CAAACACAAUUAGCGGU----------------------------------------------------------------------- l=17 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGA--- l=21 a=1 
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGc- l=21 a=4 
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGAc l=22 a=2 
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGAc l=20 a=1 

mb-01111
ax-1011001
ku-01
ss-101010011110
fn-101
